##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane4_Index6_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	22776199	
Filtered Sequences	0	
Sequence length	90	
%GC	50	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.19931108785974	33.0	31.0	34.0	31.0	34.0
2	32.435818285570825	34.0	31.0	34.0	31.0	34.0
3	32.44361488938519	34.0	31.0	34.0	31.0	34.0
4	36.08921708139273	37.0	35.0	37.0	35.0	37.0
5	35.97915367704682	37.0	35.0	37.0	35.0	37.0
6	35.95807206461447	37.0	35.0	37.0	35.0	37.0
7	35.944305368951156	37.0	35.0	37.0	35.0	37.0
8	35.908752026622174	37.0	35.0	37.0	35.0	37.0
9	37.60587141866824	39.0	37.0	39.0	35.0	39.0
10-14	37.847655142106895	39.2	37.2	39.4	35.0	39.4
15-19	38.799671841644866	40.0	38.0	41.0	35.0	41.0
20-24	38.61545278911551	40.0	38.0	41.0	34.0	41.0
25-29	38.27657376017833	40.0	38.0	41.0	33.8	41.0
30-34	38.23634703051198	40.0	38.0	41.0	33.6	41.0
35-39	37.94532021782915	40.0	37.2	41.0	33.0	41.0
40-44	37.840988463439395	40.0	37.0	41.0	33.0	41.0
45-49	37.46857015957755	39.4	36.0	41.0	32.0	41.0
50-54	36.85002138416511	38.8	35.0	40.4	31.0	41.0
55-59	36.14697620968275	37.8	34.6	40.0	30.0	41.0
60-64	35.31110518484669	36.6	34.0	39.6	28.8	41.0
65-69	34.38100016600663	35.2	33.2	38.8	27.8	40.4
70-74	33.304178339853806	35.0	32.4	37.2	26.2	39.4
75-79	32.26280618640537	34.4	31.4	35.8	25.2	38.2
80-84	31.64441947490887	34.2	31.2	35.0	24.6	36.8
85-89	30.410002801608822	34.0	30.8	35.0	16.8	35.8
90	29.35743163290767	34.0	30.0	35.0	2.0	35.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
11	12.0
12	131.0
13	993.0
14	4797.0
15	12747.0
16	22423.0
17	31774.0
18	40617.0
19	49229.0
20	59685.0
21	70250.0
22	82395.0
23	97861.0
24	117990.0
25	147881.0
26	188003.0
27	241480.0
28	310588.0
29	393410.0
30	498246.0
31	624788.0
32	787138.0
33	1020390.0
34	1388659.0
35	2008369.0
36	3106660.0
37	4475775.0
38	4754959.0
39	2212456.0
40	26493.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	24.23097990373433	12.578706584106323	10.918511257281303	52.27180225487804
2	22.271921287434363	19.121450672092696	33.91015643103283	24.696471609440113
3	25.735966743177823	21.110629565539007	22.40570957427971	30.747694117003455
4	28.05106330516343	26.21743865163805	19.452644403045475	26.278853640153038
5	29.819435168190513	28.728335495532264	21.6476842752846	19.804545060992627
6	25.13363621383884	32.09147408661121	21.350731085551196	21.424158613998763
7	22.201935450247866	18.90430444517981	36.62393799773175	22.269822106840568
8	22.21724090134618	22.228436799309666	28.523618010186862	27.030704289157292
9	21.912093409440267	20.969332942691622	31.227041000124732	25.891532647743375
10-14	25.04574797577067	25.79658440813588	24.248753709958365	24.908913906135087
15-19	25.34871863386863	24.765585337571032	24.70512134180071	25.180574686759634
20-24	25.144027106050725	24.98310385313286	25.016578271173152	24.856290769643262
25-29	25.053286561888267	24.97917435476503	24.942782546807486	25.024756536539222
30-34	25.09107614197909	24.91614335247365	24.900499577776145	25.092280927771114
35-39	25.1133435527211	25.061618450803913	24.842244059250906	24.98279393722408
40-44	25.06113453422692	24.888901264756928	24.994711423940743	25.055252777075417
45-49	24.997400293552126	24.957155555667956	24.92468227600493	25.12076187477499
50-54	25.047282618165177	25.022582611926286	24.96727830995716	24.96285645995137
55-59	25.072710264306515	24.967370663805976	24.8975242010661	25.062394870821407
60-64	24.986446156448196	24.991004424171585	25.010559928351867	25.01198949102836
65-69	25.0050337669389	25.102398630119932	24.987032507061453	24.905535095879717
70-74	25.07834373472998	25.01594817591893	24.906275377586525	24.999432711764573
75-79	25.043025482863385	25.002665575158055	24.965123598825556	24.989185343153
80-84	24.984778542089696	25.145072214519743	24.958008340560728	24.912140902829833
85-89	25.092819536895465	25.110200094625824	24.859091297058697	24.937889071420017
90	24.791455039501393	25.250931862024007	25.086898855913688	24.870714242560908
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	76.50278215861238
2	46.96839289687448
3	56.48366086018128
4	54.32991694531647
5	49.62398022918313
6	46.557794827837604
7	44.47175755708843
8	49.24794519050347
9	47.80362605718364
10-14	49.95466188190576
15-19	50.529293320628256
20-24	50.00031787569399
25-29	50.07804309842749
30-34	50.1833570697502
35-39	50.09613748994518
40-44	50.11638731130233
45-49	50.11816216832712
50-54	50.01013907811655
55-59	50.13510513512792
60-64	49.998435647476555
65-69	49.910568862818614
70-74	50.077776446494546
75-79	50.03221082601639
80-84	49.89691944491953
85-89	50.03070860831548
90	49.66216928206231
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	6.0
1	3.0
2	0.5
3	2.0
4	3.0
5	3.5
6	4.5
7	10.5
8	15.0
9	21.0
10	28.0
11	55.0
12	95.5
13	141.0
14	250.5
15	439.5
16	782.5
17	1391.5
18	2416.0
19	4237.5
20	5412.0
21	7301.0
22	12067.5
23	19614.5
24	30346.0
25	45772.0
26	67107.0
27	95575.5
28	128916.0
29	167522.5
30	189286.0
31	211627.5
32	257314.0
33	309240.0
34	366041.0
35	420985.0
36	477194.5
37	538100.0
38	591131.5
39	635732.0
40	658721.0
41	675402.0
42	707992.0
43	736913.5
44	756553.5
45	768439.5
46	771771.0
47	770180.0
48	774663.5
49	780039.0
50	781267.0
51	777897.0
52	775402.5
53	768576.0
54	767708.0
55	772733.0
56	764620.5
57	752381.0
58	734645.5
59	708722.5
60	694599.0
61	676287.5
62	637938.5
63	590553.0
64	535227.5
65	478288.0
66	416697.5
67	352494.0
68	294568.5
69	239698.0
70	211178.0
71	186846.5
72	141312.0
73	102780.5
74	70825.0
75	44909.5
76	26393.0
77	14180.5
78	6549.0
79	2712.5
80	1523.0
81	1053.0
82	413.5
83	176.0
84	78.0
85	41.5
86	28.5
87	16.0
88	8.0
89	7.0
90	8.0
91	5.0
92	2.5
93	2.5
94	1.5
95	0.5
96	0.5
97	0.5
98	0.5
99	0.5
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.1735891050126494
2	0.052045558611425895
3	0.0
4	0.0
5	1.3171644662922027E-5
6	0.0
7	0.0
8	0.0
9	0.0
10-14	0.0
15-19	0.0
20-24	8.781096441948019E-7
25-29	8.517663548689577E-4
30-34	0.0016069406488764873
35-39	0.00349838882247209
40-44	0.003039137478558209
45-49	0.0024174358504682894
50-54	0.012844109765637365
55-59	0.002321721899251056
60-64	1.2293535018727223E-5
65-69	6.761444260299974E-5
70-74	0.005183481229681915
75-79	0.002751117515262314
80-84	5.637463915730628E-4
85-89	7.683459386704516E-4
90	0.0012952117251873326
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.2776199E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	52.88323712857862
#Duplication Level	Relative count
1	100.0
2	30.89374910070094
3	16.09899484059282
4	9.867623178277046
5	6.549980472363255
6	4.851076075561677
7	3.7503340253653725
8	2.961006392731608
9	2.453287837365619
10++	28.12801907541779
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	5032390	2.5911822	5.367237	1
CCTGG	5038125	2.5813036	6.172405	1
CTTCT	4956825	2.5625954	5.428599	1
CTGGA	4740425	2.4762065	8.357575	1
TCCAG	4618550	2.3888144	5.610643	2
CTGCT	4611255	2.373244	5.019885	1
CTCCT	4581630	2.3348043	7.0128245	1
CTGGG	4372935	2.2627463	8.051699	1
CAGGA	4295205	2.254795	5.375231	1
CTTCA	4250055	2.2081294	5.3814754	1
CTCCA	4295995	2.2001274	7.4107304	1
CCCAG	4258200	2.1709857	6.9875	1
CAGAA	3986705	2.1127298	5.0131783	1
CTCTG	3987135	2.0520322	6.310231	1
CTGAA	3539150	1.8662733	5.3596916	1
CTCAG	3388890	1.7528076	5.6450753	1
>>END_MODULE
